共发表研究论文91篇，其中SCI收录论文84篇，以第一作者、通讯作者及联合通讯作者发表论文33篇，其中SCI论文31篇，影响因子 IF 为 66. 766（以2009年计），同时申请发明专利9项（两项为第一发明人，均已授权）。部分代表论文如下：
1. Jian-Xin Pu, Wei-Lie Xiao, Yang Lu, Rong-tao Li, Hong-mei Li, Li Zhang, Sheng-Xiong Huang, Xian Li, Qin-shi Zhao, Qi-Tai Zheng, and Han-Dong Sun, Kadlongilactones A and B, Two Novel Triterpene Dilactones from Kadsura longipedunculata Possessing a Unique Skeleton, Org. Lett., 2005, 7 (22), 5079-5082.
2. Jian-Xin Pu, Rong-Tao Li, Wei-Lie Xiao, Ning-Bo Gong, Sheng-Xiong Huang, Yang Lu, Qi-Tai Zheng, Li-Guang Lou, and Han-Dong Sun, Longipedlactones A–I, Nine Novel Triterpene Dilactones Possessing a Unique Skeleton from Kadsura longipedunculata. Tetrahedron, 2006, 62, 6073-6081.
3. Jian Xin Pu, Wei-Lie Xiao, Hong-mei Li, Sheng-Xiong Huang, Sheng-Hong Li, and Han-Dong Sun, Three New Compounds from Kadsura longipedunculata., Helv. Chim. Acta, 2007, 90, 723-729.
4. Jian-Xin Pu, Jing-Feng Zhao, Xiao-Dong Yang, Shuang-Xi Mei, Hong-Bin Zhang, Liang Li*, A New Sesquiterpene Lactone from Ainsliaea bonatii, Chin. Chem. Lett., 2004, 15 (12), 1454-1456.
5. Jian-Xin Pu, Liu-Meng Yang, Wei-Lie Xiao, Rong-Tao Li, Chun Lei, Xue-Mei Gao, Sheng-Xiong Huang, Sheng-Hong Li, Yong-Tang Zheng, Hao Huang, Han-Dong Sun, Compounds from Kadsura heteroclita and Related anti-HIV activity. Phytochemistry, 2008, 69 (5), 1266-1272.
6. Jian-Xin Pu, Sheng-Xiong Huang, Jie Ren, Wei-Lie Xiao, Li-Mei Li, Rong-Tao Li, Liang-Bo Li, Tou-Gen Liao, Li-Guang Lou, Hua-Jie Zhu, and Han-Dong Sun, Isolation and Structure Elucidation of Kadlongilactones C-F from Kadsura longipedunculata by NMR Spectroscopy and DFT Computational Methods. J. Nat. Prod., 2007, 70 (11), 1706-1711.
7. Jian-Xin Pu, Xue-Mei Gao, Chun Lei, Wei-Lie Xiao, Li-Bin Yang, Yong Zhao, Li-Mei Li, Sheng-Xiong Huang, Yong-Tang Zheng, and Han-Dong Sun, Three New Compounds from Kadsura longipedunculata, Chem. Pharm. Bull., 2008, 56 (8), 1143-1146.
8. Sheng Chao Yang, Jian Xin Pu*, Ying Lu, Feng Hui Xiao, Wei Lie Xiao, Han Dong Sun, A new lipophilic monosaccharide from Erigeron annuus, Chin. Chem. Lett., 2008, 19 (10), 1231-1233. (通讯作者)
9. Yong-Bo Xue, Jian-Hong Yang, Xiao-Nian Li, Xue Du, Jian-Xin Pu*, Wei-Lie Xiao, Jia Su, Wei Zhao, Yan Li, and Han-Dong Sun*, Henrischinins A−C: Three New Triterpenoids from Schisandra henryi, Org. Lett., 2011, 13(6), 1564–1567. (联合通讯作者)
10. Fei He, Jian-Xin Pu*, Sheng-Xiong Huang, Yuan-Yuan Wang, Wei-Lie Xiao,Li-Mei Li, Jing-Ping Liu, Hai-Bo Zhang, Yan Li, and Han-Dong Sun*, Schinalactone A, a New Cytotoxic Triterpenoid from Schisandra sphenanthera, Org. Lett., 2010, 12 (6), 1208-1211. (联合通讯作者)
11. Xiao Luo, Jian-Xin Pu,* Wei-Lie Xiao, Yong Zhao, Xue-Mei Gao, Xiao-Nian Li, Hai-Bo Zhang, Yuan-Yuan Wang, Yan Li, and Han-Dong Sun*, Cytotoxic ent-Kaurane Diterpenoids from Isodon rubescens var. lushiensis, J. Nat. Prod., 2010, 73, 1112-1116. (联合通讯作者)
12. Zhi-Jun Wu, Jian-Xin Pu*, Li-Mei Li, Dong-Mei Fang, Hua-Yi Qi, Jian-Zhong Chen, Guo-You Li*, Han-Dong Sun and Guo-Lin Zhang, Electrospray tandem mass spectrometry of longipedlactone triterpenoids, J. Mass. Spectrom., 2010, 45, 451-455. (联合通讯作者)
13. Jian-Hong Yang, Jian-Xin Pu*, Jin Wen, Xiao-Nian Li, Fei He, Yong-Bo Xue, Yuan-Yuan Wang, Yan Li, Wei-Lie Xiao, and Han-Dong Sun*, Cytotoxic Triterpene Dilactones from the Stems of Kadsura ananosma, J. Nat. Prod., 2010, 73, 12-16. (联合通讯作者)
14. Yong Zhao, Jian-Xin Pu*, Sheng-Xiong Huang, Li-Sheng Ding, Ying-Li Wu, Xian Li, Li-Bin Yang, Wei-Lie Xiao, Guo-Qiang Chen, and Han-Dong Sun*, ent-Kaurane Diterpenoids from Isodon pharicus, J. Nat. Prod., 2009, 72, 988-993. (联合通讯作者)
15. Fei He, Wei-Lie Xiao, Jian-Xin Pu*, Ying-Li Wu, Hai-Bo Zhang, Xiao-Nian Li, Yong Zhao, Li-Bing Yang, Guo-Qiang Chen, Han-Dong Sun*, Cytotoxic ent-Kaurane Diterpenoids from Isodon sinuolata, Phytochemistry, 2009, 70, 1462-1466. (联合通讯作者)
